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Clint’s Dead

Biology Thursday, January 6, 2005 . This is a SciScoop post by Ricky James

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The Coriell Institute does have two cell lines from Clint, which can be used to work out any kinks and gaps in the chimp sequence. But living cell lines are not the perfect way to preserve a genome, because they mutate and change. They can also die, which is what happened to a few cell lines created during the publicly funded Human Genome Project. The anonymity of the donors meant new lines could not be established, and the lack of back-up cell lines caused trouble when unexpected patterns appeared in the DNA sequence, says Eichler. Ideally, researchers would like to have both cell lines and a variety of frozen samples from each animal that has been sequenced. This would not only preserve the original genome for checking, but also allow researchers to compare gene expression in different tissues, for instance.

These kinds of precautions are especially important for genetically variable creatures such as chimps. Most of the other animals being sequenced come from highly inbred lines, meaning that if the original individual dies, other animals with virtually identical genomes will remain available for study.

The National Human Genome Research Institute in Bethesda, Maryland, is attempting to archive tissue from sequenced animals, says Jane Peterson, director of the institute’s comparative sequencing programme. But she thinks the real priority should be to reduce the cost of sequencing.

She points out that sequencing the human genome cost several hundred million dollars. Sequencing Clint cost only about $18 million. If prices continue to fall this steeply, sequencing other individuals will be so cheap that preserving biological material from the first individual of a species to be sequenced will be unnecessary, she says. “We are pushing for the $1000 genome, then the $100 genome.”

Text for this article, except for the wisecrack about stuffing Craig Venter, comes from a press release by New Scientist.

1 Response to Clint’s Dead

Sweetwind

January 6th, 2005 at 9:00 am

I can’t help but think that Yerkes is not a very nice place to be “kept.” Perhaps the project would have had more success if they’d turned to a chimp who lived in better conditions. Free-living chimps in Africa wouldn’t be practical (and with the rampant bushmeat problem, perhaps the life expectancy is even less than at Yerkes). I would nominate Loulis, the youngest of Washoe’s family. At 26 he is just 2 years older than Clint was, but I’d put a lot more money on his longevity.

Then again, one of the reasons that CHCI is a better place to live is that all the research perfomed there is “non-invasive; the research either does not disrupt the chimpanzees’ lives or, should it be potentially disruptive to the chimpanzees’ daily activities, it is entirely voluntary. If a research design proves to be upsetting to the chimpanzees, the research is halted and revised to be less intrusive.” But hey, if Craig Ventner didn’t find it too much of an annoyance, perhaps Loulis wouldn’t either.

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